PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_000764-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

WRKY

Protein Properties

Length: 576aa MW: 62358.8 Da PI: 6.6013

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_000764-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.6	6.8e-30	227	286	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK +g+++pr+YYrCt a Cpv+k+v+r+aed +++++tYeg+Hnh+ NNU_000764-RA 227 MNDGCQWRKYGQKIARGNPCPRAYYRCTVApACPVRKQVQRCAEDMSILITTYEGTHNHP 286 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.9E-31	212	288	IPR003657	WRKY domain
SuperFamily	SSF118290	9.81E-27	220	288	IPR003657	WRKY domain
PROSITE profile	PS50811	28.231	222	288	IPR003657	WRKY domain
SMART	SM00774	1.8E-35	227	287	IPR003657	WRKY domain
Pfam	PF03106	2.6E-26	228	286	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence Send to blast
MAHGSPAKLH EFSRWVTNSL SSETRIPTVR TEMSSMETIL RASSTIKKDQ EDPLESAKAE 60 MGEVREENER LKMILSRIVK DYQSLQMQFY GIVEQEEAKK SGDTAPVDQE IEEPELVSLS 120 LGRTASEPKK DEKNSNSSKS KEDDDQEGLS LGLDCKFEVS KPASTEKASN PSQENSFEEP 180 KEEDAGETWP PSKILKAMRS GDDEVSQQTH VKKARVSVRA RCDTPTMNDG CQWRKYGQKI 240 ARGNPCPRAY YRCTVAPACP VRKQVQRCAE DMSILITTYE GTHNHPLPVS ATAMASTTSA 300 AACMLMSGSS SSRSIPGSSA TNTTSADLHG LNFNLGDNTR ARPSFYLPNS SISSATSHPT 360 ITLDLTAPPS SSASSSSQNN RLSPNFPVQR YSSTSFNLSS TEPNNSQLTW GNGYLSYGAQ 420 PYTKNQQLGP LNLGRQPQPQ EHFYQSYMQK NNPAPSQQSL TETIAAATKA ITSDPSFRSA 480 LAAAITSIVG GGSTGAQGNQ GGCENFGQNL KWGENINTIT SYTSTPNGNG CASSYLNRSS 540 SSNTQQGSLM ILPPALPFST SKSASAFPAD TRDHIN

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence Send to blast

MAHGSPAKLH EFSRWVTNSL SSETRIPTVR TEMSSMETIL RASSTIKKDQ EDPLESAKAE  60
MGEVREENER LKMILSRIVK DYQSLQMQFY GIVEQEEAKK SGDTAPVDQE IEEPELVSLS  120
LGRTASEPKK DEKNSNSSKS KEDDDQEGLS LGLDCKFEVS KPASTEKASN PSQENSFEEP  180
KEEDAGETWP PSKILKAMRS GDDEVSQQTH VKKARVSVRA RCDTPTMNDG CQWRKYGQKI  240
ARGNPCPRAY YRCTVAPACP VRKQVQRCAE DMSILITTYE GTHNHPLPVS ATAMASTTSA  300
AACMLMSGSS SSRSIPGSSA TNTTSADLHG LNFNLGDNTR ARPSFYLPNS SISSATSHPT  360
ITLDLTAPPS SSASSSSQNN RLSPNFPVQR YSSTSFNLSS TEPNNSQLTW GNGYLSYGAQ  420
PYTKNQQLGP LNLGRQPQPQ EHFYQSYMQK NNPAPSQQSL TETIAAATKA ITSDPSFRSA  480
LAAAITSIVG GGSTGAQGNQ GGCENFGQNL KWGENINTIT SYTSTPNGNG CASSYLNRSS  540
SSNTQQGSLM ILPPALPFST SKSASAFPAD TRDHIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-20	214	288	1	74	WRKY transcription factor 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010256554.1	0.0	PREDICTED: probable WRKY transcription factor 72 isoform X1
TrEMBL	D7SIE7	0.0	D7SIE7_VITVI; Putative uncharacterized protein
STRING	VIT_17s0000g05810.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	2e-79	WRKY DNA-binding protein 72